PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG306100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 303aa    MW: 32997.6 Da    PI: 4.7497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG306100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-112302701055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.3NG306100.1.p 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14220286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12225281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12229274No hitNo description
PfamPF000103.8E-8230270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAGGLIAEV GWTAFDFLSH GEESEVMAQL LGAFPSHGEE GHHELPWSDQ ASNAYSDNIG  60
SSLAVPPAYE GYCFSDSNEA LRISSCIAPD DLSSVQEYSA TEFVNMFSNH SPNFYGNGDG  120
SCEDLDDPSM IMLDSVSATN KRKHLAEELD GKTRGRKCAR KGETKRTKRA KRSGDEDASM  180
AIASGSPTSC CTSDSDSNGS LESADADARP KGKARAGRGA TTEPQSIYAR KRRERINERL  240
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMYAPIAYN GMNIGIDLNM  300
DR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616595e-48AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964147.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLK3Z8E30.0K3Z8E3_SETIT; Uncharacterized protein
STRINGSi022813m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-51bHLH family protein